PairedDerep-class

Source: R/allClasses.R, R/subset-methods.R

A pair of two derep objects

# S4 method for PairedDerep
length(x)

# S4 method for PairedDerep,index,missing,ANY
[(x, i, j, ..., drop = TRUE)

Arguments

x

PairedDerep-class
i

index or logical indicating which sequencing read file pair to select or character string giving its name
j

not used
...

not used
drop

not used

Value

A PairedDerep-class object

Details

derep-class objects as defined by the package dada2 (derepFastq] are bundled as forward and reverse read pairs in this object

Slots

derepF

derep object containing forward read pairs created by dada2's derepFastq function

derepR

derep object containing reverse read pairs created by dada2's derepFastq function

Author

Emanuel Heitlinger