Fill sequence tables in a MultiAmplicon object to include selected samples for all amplicons.
.fillSampleTables(ST, samples)
| ST | a sequence tabel from a MultiAmplicon object |
|---|---|
| samples | a character vector giving names of samples to retain. |
a sequence table for use in a MultiAmplicon object
In a MultiAmplicon object for some primer pairs some samples might
have no amplified sequence variants at all. This function creates
matrices including consistent samples for all the sequenceTableNoChime
slots of a MultiAmplicon object and returnes filled tables for all requested
samplese. Cells are filled with 0 (zeros) for samples originally
not recoverd in an amplicon.
Emanuel Heitlinger