Obtain summary data for amplicons run through the MultiAmplicon pipeline.
getPipelineSummary(MA)
| MA | MultiAmplicon object with all slots filled for tracking. |
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a data.frame of sample, unique sequences and sequencing reads numbers per amplicon.
Get statistics on the number of samples (with read data), the number of unique sequence variants and the number of reads left after processing of amplicons in the MultiAmplicon pipeline. In some steps of the pipeline dada2 performs quality filtering excluding non-credible sequence variants.
Emanuel Heitlinger