Remove chimeric sequencing read pairs from a MultiAmplicon object.
removeChimeraMulti(MA, mc.cores = getOption("mc.cores", 1L), ...)
MA | A |
---|---|
mc.cores | integer number of cores to use for parallelization accross different amplicons. |
... | passed on to
|
a MultiAmplicon-class
object with the
sequenceTableNoChime
filled
This is a wrapper for the removeBimeraDenovo
function of dada2
. It works on an
MultiAmplicon-class
object with the sequenceTable
slot filled. Use dadaMulti
,
derepMulti
, mergeMulti
and
makeSequenceTableMulti
on a amplicon sorted (see
sortAmplicons
) MultiAmplicon-class
object to preprocess your multi-marker data to this point.
Emanuel Heitlinger